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Short description

This EAP case would like to create a service with EOSC that allows multiple users to run tasks that are above the level of a PC through the same interface. In fact, it would like to develop a “service in service” - specifically for projects that collect nature conservation and biodiversity data.

To serve these diverse tasks this case needs a fully configurable VM which let us deploy our service interface (API) which will be available in the OpenBioMaps Network and provide computation capacity access to the involved projects.

Type of communityOthers (EAP) 
Community contactDr. Miklós Bán (banm@vocs.unideb.hu)
InterviewerMiguel Caballer
Date of interview
Meetings
Supporters


User stories

Info
titleInstruction

Requirements are based on a user story, which is  is an informal, natural language description of one or more features of a software system. User stories are often written from the perspective of an end user or user of a system. Depending on the community, user stories may be written by various stakeholders including clients, users, managers or development team members. They facilitate sensemaking and communication, that is, they help software teams organize their understanding of the system and its context. Please do not confuse user story with system requirements. A user story is an informal description of a feature; a requirement is a formal description of need (See section later).

User stories may follow one of several formats or templates. The most common would be:

"As a <role>, I want <capability> so that <receive benefit>"

"In order to <receive benefit> as a <role>, I want <goal/desire>"

"As <persona>, I want <what?> so that <why?>" where a persona is a fictional stakeholder (e.g. user). A persona may include a name, picture; characteristics, behaviours, attitudes, and a goal which the product should help them achieve.

Example:

“As provider of the Climate gateway I want to empower researchers from academia to interact with datasets stored in the Climate Catalogue, and bring their own applications to analyse this data on remote cloud servers offered via EGI.”


We would like to create a service with EOSC that allows multiple users to run tasks that are above the level of a PC through the same interface. In fact, we would like to develop a “service in service” - specifically for projects that collect nature conservation and biodiversity data.

To serve these diverse tasks we need a fully configurable VM which let us deploy our service interface (API) which will be available in the OpenBioMaps Network and provide computation capacity access to the involved projects.

According to our recent experiences in our PC based local computational cluster, the number of processors is the most important in these ecological analyzes. A “typical” analysis is now running at an acceptable rate on 16 threads. The parallel computing requirements of image analysis can be much higher, and GPU usage can be interesting there. Some analyzes, for example, genetic analyzes or larger spatial analyzes require a lot of memory.


No.

User stories

US1

As a service owner, I need a fully configurable VM which let us deploy our service interface

US2

As a service owner, I want to be able to deploy the service in an automated way using the Cloud

US3

As a service owner, I would be interested in using GPUs.

No.

User stories

US1

US2

...



Use cases

Info
titleInstruction

The OpenBiomaps system is deployed as a single VM on EGI Cloud Compute. A single VM will attach two pre-created volumes for persistence with a total size of 2TB. Services are launched using docker compose.
It will be evaluated the usage of the following services:

  • B2FIND
  • EGI DataHub
  • B2DROP

Technical Plan:

https://drive.google.com/file/d/1t4JA53-GmY2_nc4dfFSU6iPEfr7bsHAm/view?usp=sharing

A use case is a list of actions or event steps typically defining the interactions between a role (known in the Unified Modeling Language as an actor) and a system to achieve a goal.

Include in this section any diagrams that could facilitate the understanding of the use cases and their relationships.


Step

Description of action

Dependency on 3rd party services (EOSC-hub or other)

UC1



UC2

...


...





Requirements

Technical Requirements


Info
titleInstruction

- Requirement number: Use numbers RQ1, RQ2, RQ3, ...
- Requirement title: Use a short but descriptive title. Use the same title in the Jira ticket 'Summary' field
- Link to requirement JIRA ticket: Open a ticket in <this JIRA queue  https://jira.eosc-hub.eu/projects/EOSCWP10/issues/EOSCWP10-4?filter=allopenissues> (click on 'CREATE' button in the middle-top of JIRA)
- Source use case: Refer back to the use cases above (UC1, 2, ...)



Requirement number

Requirement title

Link to Requirement JIRA ticket

Source Use Case

Example

EOSC-hub to provide an FTS data transfer service

Jira
serverEGI JIRA
serverId89b2a620-0cec-34da-8cfe-a343203be114
keyEOSCWP10-21

UC1

RQ1




RQ2









Capacity Requirements


EOSC-hub services

Amount of requested resources

Time period

EGI Cloud Compute1 VM instances linux based:
48 CPU per VM,
96GB RAM per VM,
20 GB disk per VM,
Ports open: 22, 80, 9880
Until end of EAP (end of 2020 as of now)
EGI Object Storage1 x 2TBUntil end of EAP (end of 2020 as of now)
Infrastructure ManagerOrchestrate deploymentUntil end of EAP (end of 2020 as of now)


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